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If your crystal structure doesn't look quite right, here
are some quick tips:
Check your input data
Check that you've entered the crystal data
correctly - did you mistype any coordinates?
Remember also that for crystals, coordinates should
be entered as fractional coordinates - so
all your values should (ideally) be in the range
0-1.
As a quick guide, use the Transform > List Bonds
command to check bond distances. If you find atoms
at zero-distance from the central atom, you've
certainly made a mistake! (perhaps you entered too
many atoms in the asymmetric unit?).
Check the symmetry
You may also have a problem with your symmetry. If
you entered a spacegroup symbol, it might be that
you need to use an origin offset, or to experiment
with different origin settings.
You'll probably find
the Spacegroups Browser useful here:
display the Edit Crystal window (Edit > Structure),
then click the Browse button. You can now explore
different spacegroups settings, including
unconventional ones (turn on the Show
Unconventional Settings checkbox) and different
origin choices.
Check the bond specifications
If your atomic coordinates are correct but you don't
get the correct coordination polyhedra displayed,
check the bond specifications: you may need to
increase the bond lengths (or edit the atom sizes if
you're using the "calculate from radii" bond length
mode) to encompass all the coordinating atoms.
When working with a polyhedral model, note that
polyhedral styles can be assigned for different
elements and/or different sites, using the
Atoms pane of the Model Options window - you don't
have to accept whatever default styles CrystalMaker
assigns.
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